1. Anatomy of a MPSE | 2. Overview of the design of MicrobiotaProcess package | 3. MicrobiotaProcess profiling | 3.1 bridges other tools | 3.2 alpha diversity analysis | 3.3 calculate alpha index and visualization | 3.4 The visualization of taxonomy abundance | 3.5 Beta diversity analysis | 3.5.1 The distance between samples or groups | 3.5.2 The PCoA analysis | 3.5.3 Hierarchical cluster analysis | 3.6 Biomarker discovery | 4. Need helps? | 5. Session information | 6. References

1. Introduction | 2. Install | 3. Usage | 3.1 Cartesian coordinates | 3.2 Polar coordinates | 3.3 interactive | 4. Need helps? | 5. Session information

Setup | 1. Introduction | 2. Install | 3. Usage | 3.1 add single layer | 3.2 add multiple layers on the same position. | 4. Need helps? | 5. Session information | 6. Reference

Introduction | Overview of SVP | Install | Quantification of cell states using SVP | Quantification of BIOCARTA pathway or other function | Quantification of cell-type | Quantification of cell-type using the pre-established marker gene sets | Quantification of cell-type using the reference single-cell data | Spatial statistical analysis | Univariate spatial statistical analysis | Identification of spatial variable features | Identification of local spatial aggregation areas | Bivariate spatial statistical analysis | Global bivariate spatial analysis | Local bivariate spatial analysis | Session information | References